Reconstruction

We assume that the necessary preprocessing has been completed and an array of type ParticleHolography.CuWaveFront, d_wavefront, has been obtained. Using this array, we perform a 3D reconstruction of the observed volume. In Gabor holography, we have already described the functions for obtaining the projection images in the optical axis direction of the observed volume. In addition to this, depending on the required information, you can select the following reconstruction functions.

ParticleHolography.cu_get_reconst_xyprojection — Function

cu_get_reconst_xyprojectin(wavefront, transfer_front, transfer_dz, slices)

Get the XY projection of the reconstructed volume from the wavefront using the transfer functions transfer_front and transfer_dz. transfer_front propagates the wavefront to the front of the volume, and transfer_dz propagates the wavefront between the slices. slices is the number of slices in the volume.

Arguments

wavefront::CuWavefront{ComplexF32}: The wavefront to reconstruct. In Gabor's holography, this is the square root of the hologram.
transfer_front::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront to the front of the volume. See CuTransfer.
transfer_dz::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront between the slices.
slices::Int: The number of slices in the volume.

Returns

CuArray{Float32,2}: The XY projection of the reconstructed volume.

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ParticleHolography.cu_get_reconst_vol — Function

cu_get_reconst_vol(holo, transfer_front, transfer_dz, slices, return_type)

Reconstruct the observation volume from the wavefront using the transfer functions transfer_front and transfer_dz. transfer_front propagates the wavefront to the front of the volume, and transfer_dz propagates the wavefront between the slices. slices is the number of slices in the volume.

Arguments

wavefront::CuArray{ComplexF32,2}: The wavefront to reconstruct. In Gabor's holography, this is the square root of the hologram.
transfer_front::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront to the front of the volume. See CuTransfer.
transfer_dz::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront between the slices.
slices::Int: The number of slices in the volume.
return_type::Type: The return type of the reconstructed volume. Default is N0f8.

Returns

CuArray{return_type,3}: The reconstructed intensity volume.

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ParticleHolography.cu_get_reconst_complex_vol — Function

cu_get_reconst_complex_vol(holo, transfer_front, transfer_dz, slices)

Reconstruct the observation volume from the wavefront using the transfer functions transfer_front and transfer_dz and return the complex amplitude volume. transfer_front propagates the wavefront to the front of the volume, and transfer_dz propagates the wavefront between the slices. slices is the number of slices in the volume.

Arguments

wavefront::CuArray{ComplexF32,2}: The wavefront to reconstruct. In Gabor's holography, this is the square root of the hologram.
transfer_front::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront to the front of the volume. See CuTransfer.
transfer_dz::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront between the slices.
slices::Int: The number of slices in the volume.

Returns

CuArray{ComplexF32,3}: The reconstructed complex amplitude volume.

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ParticleHolography.cu_get_reconst_vol_and_xyprojection — Function

cu_get_reconst_vol_and_xyprojection(wavefront, transfer_front, transfer_dz, slices, return_type)

Reconstruct the observation volume from the wavefront and get the XY projection of the volume using the transfer functions transfer_front and transfer_dz. transfer_front propagates the wavefront to the front of the volume, and transfer_dz propagates the wavefront between the slices. slices is the number of slices in the volume.

Arguments

wavefront::CuWavefront{ComplexF32}: The wavefront to reconstruct. In Gabor's holography, this is the square root of the hologram.
transfer_front::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront to the front of the volume. See CuTransfer.
transfer_dz::CuTransfer{ComplexF32}: The transfer function to propagate the wavefront between the slices.
slices::Int: The number of slices in the volume.
return_type::Type: The return type of the reconstructed volume. Default is N0f8.

Returns

CuArray{return_type,3}: The reconstructed volume.
CuArray{Float32,2}: The XY projection of the reconstructed volume.

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